When setting up your pricing rules you have the option to setup rules based on the Cost and Sale Price. For more details on pricing rules and how they work click here.
So if you list on Amazon UK and Amazon Germany for example, you cannot have a different cost price for each. But what you can do is to use the pricing rules to compensate. SellerExpress will allow you to setup different rules for each marketplace which allows us to do this.
For example you setup your Amazon UK rules based on Cost Price (e.g. minimum price = cost price + £0 + 0%). Then for Amazon Germany - you change your German pricing rules to have an additional value in them (e.g. minimum price = cost price + £1 + 0%)
This means that Amazon Germany will have a Minimum Price £1 higher than UK.
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